PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO94708

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 291aa MW: 34185.3 Da PI: 8.1896

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO94708	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70	4.4e-22	27	108	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +e+++Li +r e+e+++ ++k++k+lWe v ++m+ +g+ r+p qCk+kw+nl +ryk +++ ++ +++p+f++l+ OMO94708 27 QWGPEETRELILIRGELERDFTAAKRNKTLWEIVNARMKNTGYIRTPDQCKCKWKNLLNRYKGKETSYPEN----GRQFPFFEELH 108 7************************************************************99999874....668****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MFGGGGEKEG VGGRISSGLG AGAGGGQWGP EETRELILIR GELERDFTAA KRNKTLWEIV 60 NARMKNTGYI RTPDQCKCKW KNLLNRYKGK ETSYPENGRQ FPFFEELHAV FTERAKNLQR 120 LLLESEAGSV QAKKKMKRIS TDRDRSSDEF SEDEEDDDED ESEEERQNAK SISRKRKAET 180 IGLDKSPRPN SATSITLTNA GLQEMLREFF QQQQRMEMQW REIMERRARE RQLFEQEWRQ 240 SMEKLERERL MAERAWRERE EQRRLREESR AERRDALLTT LLNKLINDNT L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	9e-28	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO94708