PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO94585
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family FAR1
Protein Properties Length: 178aa    MW: 20672.6 Da    PI: 7.837
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO94585genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.71.1e-1444127291
      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                Y +Y+k+ GF + ++ +k+   +g + + +f Cs+eg ++++  +      tr++++ +C a + ++ +  + ++v+++ +eH+H+lap
  OMO94585  44 LYAFYGKRYGFGIIQRDNKRL--SGFVQRVHFACSREGCPRRNAVQ---MCFTRPSQEAQCLAGMGIHWD-GSAYKVKSVIHEHSHNLAP 127
               69************9998887..999*************9997655...999***************999.9***************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MELRDEVLPD VCNKVPVIER VDEDTDVLSL HIGMAFDSVE FAMLYAFYGK RYGFGIIQRD  60
NKRLSGFVQR VHFACSREGC PRRNAVQMCF TRPSQEAQCL AGMGIHWDGS AYKVKSVIHE  120
HSHNLAPKKG VGFQCNKGEF EENWTQMVVT YGYGENRWFT KLYKNREMWV PAFVRENF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.19e-08FAR1 family protein