PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO94226

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

RAV

Protein Properties

Length: 391aa MW: 44537.4 Da PI: 5.3149

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO94226	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.9	2.9e-09	59	98	10	54
AP2 10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl+ OMO94226 59 QQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLR 98 45788**999......44******99**********98 PP
2	B3	89.5	2.5e-28	178	270	1	83
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ltpsdv+k++rlv+pkk+a ++ gg+ e+++l+++d+ r+W+++++y+++s+++v+t+GW++Fvk+++L+e+D+++F+ OMO94226 178 FQKELTPSDVGKLNRLVIPKKYAVKYfpyicendqvGGNGVEDIELVFYDKLMRTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLREKDIITFY 270 99*****************************9997777899***********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MEDEASSMVS NAKFNFAAET SDSGNSNYPL RASKRARHEI TNIASSSSSS ARSKGVVPQQ 60 NGHWGAQIYA NHQRIWLGTF KSEKEAAMAY DSAAIKLRSG DSHRNFPWSD QNIQEPNFQN 120 LYTTEDVLNM IRDGSYQAKF AEYINIVSKS KDGIMLGTNV SRNLVLNGDV QFSCMQLFQK 180 ELTPSDVGKL NRLVIPKKYA VKYFPYICEN DQVGGNGVED IELVFYDKLM RTWKFRYCYW 240 RSSQSFVFTR GWNRFVKEKK LREKDIITFY TCECPAAAGG GENFDGQNFF LIDVNHYNDH 300 NDDHGEQSNC INTEENLVFN RLGFSSNVDT HTHEDLQQQV ELELELELNL GKNFNCRIES 360 GNSQLDEENE ALSGNNVEGK RIITLFGVQI N

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MEDEASSMVS NAKFNFAAET SDSGNSNYPL RASKRARHEI TNIASSSSSS ARSKGVVPQQ  60
NGHWGAQIYA NHQRIWLGTF KSEKEAAMAY DSAAIKLRSG DSHRNFPWSD QNIQEPNFQN  120
LYTTEDVLNM IRDGSYQAKF AEYINIVSKS KDGIMLGTNV SRNLVLNGDV QFSCMQLFQK  180
ELTPSDVGKL NRLVIPKKYA VKYFPYICEN DQVGGNGVED IELVFYDKLM RTWKFRYCYW  240
RSSQSFVFTR GWNRFVKEKK LREKDIITFY TCECPAAAGG GENFDGQNFF LIDVNHYNDH  300
NDDHGEQSNC INTEENLVFN RLGFSSNVDT HTHEDLQQQV ELELELELNL GKNFNCRIES  360
GNSQLDEENE ALSGNNVEGK RIITLFGVQI N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-110	RAV family protein

Link Out ? help Back to Top
Ensembl	OMO94226