PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93193
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 92aa    MW: 10447.7 Da    PI: 8.5213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93193genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-0919591454
              HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
              d+i +  ++L++l+P++ + +s K+s + +L+++++YI++L
  OMO93193 19 DQITDLVSKLQQLIPELRGRRSDKVSASKVLQETCNYIRNL 59
              6899999*********88*********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    
MSSRRSRSRQ SGNSRITDDQ ITDLVSKLQQ LIPELRGRRS DKVSASKVLQ ETCNYIRNLH  60
REVDDLSDRL SELLASSDTD SDQAAIIRSL LM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-41bHLH family protein