PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO92166

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 694aa MW: 80274.9 Da PI: 6.0995

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO92166	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.3	3e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+v+++++ HnHel OMO92166 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHELL 162 69******************8888.**************************************998766789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MTMRPSNNIW IRRQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETASTSSS SEAVFTPYVG 60 QIFKSDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK 240 RENDTLELLE ACKAMAERDG NFVYDYTTDE NNKVENISWS YGDSVRAYTV YGDVVTFDTT 300 YRSITYGLLL GVWFGIDNHG KPIFFGCVLL QDESSNSFAW ALQTFLRFMR GRHPQTILTD 360 IDSSLRDAIA RELPNSEHVI CLWHVLSKLS SWFSLPLGLQ YEDFKAEFDM LCHLEGIEEF 420 EHQWNLLVAR FGLASDKHIA LLFSYRTSWP LSYIRGYFLA RSMTAEFSQS LDAFLKEILG 480 GQTCLQLFFE QVGVAADLKN QSREGVQYTY MKTCLPIEES ARSIFTPYAF TALQHEIVLS 540 MQYATTEMAN GSYLVRHYKK IDGEYLVIWI PQDEQIHCSC KEFEHSGILC RHCLRVLTVK 600 NYFEIPEKYV LYRWRLESSL VPHVEDQNAQ CSSDECAQAF HSLAANLLTE SLLTKDRFNH 660 VHRELSRLLD HVREMPLSDE FSLNMAANNI TESN

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MTMRPSNNIW IRRQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETASTSSS SEAVFTPYVG  60
QIFKSDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK  240
RENDTLELLE ACKAMAERDG NFVYDYTTDE NNKVENISWS YGDSVRAYTV YGDVVTFDTT  300
YRSITYGLLL GVWFGIDNHG KPIFFGCVLL QDESSNSFAW ALQTFLRFMR GRHPQTILTD  360
IDSSLRDAIA RELPNSEHVI CLWHVLSKLS SWFSLPLGLQ YEDFKAEFDM LCHLEGIEEF  420
EHQWNLLVAR FGLASDKHIA LLFSYRTSWP LSYIRGYFLA RSMTAEFSQS LDAFLKEILG  480
GQTCLQLFFE QVGVAADLKN QSREGVQYTY MKTCLPIEES ARSIFTPYAF TALQHEIVLS  540
MQYATTEMAN GSYLVRHYKK IDGEYLVIWI PQDEQIHCSC KEFEHSGILC RHCLRVLTVK  600
NYFEIPEKYV LYRWRLESSL VPHVEDQNAQ CSSDECAQAF HSLAANLLTE SLLTKDRFNH  660
VHRELSRLLD HVREMPLSDE FSLNMAANNI TESN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO92166