PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO91420

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 888aa MW: 99498.3 Da PI: 7.9765

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO91420	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.6	1.1e-08	206	253	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OMO91420 206 SHSLAERVRREKISERMKVLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 253 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence
MAAFSYQPQA HTHPFLLDSI FFPNVAVSNS PTTPNSTKLV SAASGFMDET GNCFNSNFHC 60 FPQFQELDSD STLHPAKFHE SSCVDHSSKL VAHSDNDNEP SVTKKQSTDD STVVDKLESG 120 EQVTQNVTLN DHRKRKSSRN GNSAQSKDPK EGKSKKQRKC NVENQKNNEK KESKGDNKKD 180 QKKASDKEPP TGYIHVRARR GQATDSHSLA ERVRREKISE RMKVLQRLVP GCDKVTGKAL 240 MLDEIINYVQ SLQNQVEFLS MKLASVNPMF YDFGVDLEAL MVRPDQRVNS SNIAAGTLPC 300 LQQCNPTEGS AFADTTTATF APAPPNNYPL LDASLLLHQR PNLLFPHPHP HQFLKIDQTP 360 MESRVTVAAI NLEGRALQWH INWEKYRSRA QQGEVTWDAF VAALEKRFGD KAKIDAMTEL 420 LRLKQTCNVS DFHDKFEYWL GRLEMPENQE VSMFIEAVKP HIQQNTITKP MPFTTKQPPL 480 KEPTKNTKLV RSADFDEKRA KGLCFWCDEK YTPGHKCGKR QLYIVELTED DEEEQLLEEP 540 QEESDDVVPR ISVHALSGEV AKGYKAMRII VYVGKGPLHI LIDSGSTHNF LDVNTAKKLG 600 CKIIKTGPMK ISRALENSSE CSLVQLNCIK VEGVPAADDG FLLASISASF EAVLPVEIEQ 660 LLTICVRPYK YPALQKDVIE AMTKEMLTAG IIQHSSSPFA SLPIPVPDGA WKQITMEFVE 720 GLPVSFGKSV IFVVVDKFTK YSHFMTLSHP YTALSVAQEL LKLQEVSLHL STAYHPQTDG 780 QTEVVNRVLE TYLRQNSLAD RQFHKLAPRY YGPYKVLDKI GAVAYKLDLP SSAKINSVFH 840 VSQLKKKLGF DNMVGSALPI PSDTPSLTPQ AVLDRRFVKR RNVASTQV

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence

MAAFSYQPQA HTHPFLLDSI FFPNVAVSNS PTTPNSTKLV SAASGFMDET GNCFNSNFHC  60
FPQFQELDSD STLHPAKFHE SSCVDHSSKL VAHSDNDNEP SVTKKQSTDD STVVDKLESG  120
EQVTQNVTLN DHRKRKSSRN GNSAQSKDPK EGKSKKQRKC NVENQKNNEK KESKGDNKKD  180
QKKASDKEPP TGYIHVRARR GQATDSHSLA ERVRREKISE RMKVLQRLVP GCDKVTGKAL  240
MLDEIINYVQ SLQNQVEFLS MKLASVNPMF YDFGVDLEAL MVRPDQRVNS SNIAAGTLPC  300
LQQCNPTEGS AFADTTTATF APAPPNNYPL LDASLLLHQR PNLLFPHPHP HQFLKIDQTP  360
MESRVTVAAI NLEGRALQWH INWEKYRSRA QQGEVTWDAF VAALEKRFGD KAKIDAMTEL  420
LRLKQTCNVS DFHDKFEYWL GRLEMPENQE VSMFIEAVKP HIQQNTITKP MPFTTKQPPL  480
KEPTKNTKLV RSADFDEKRA KGLCFWCDEK YTPGHKCGKR QLYIVELTED DEEEQLLEEP  540
QEESDDVVPR ISVHALSGEV AKGYKAMRII VYVGKGPLHI LIDSGSTHNF LDVNTAKKLG  600
CKIIKTGPMK ISRALENSSE CSLVQLNCIK VEGVPAADDG FLLASISASF EAVLPVEIEQ  660
LLTICVRPYK YPALQKDVIE AMTKEMLTAG IIQHSSSPFA SLPIPVPDGA WKQITMEFVE  720
GLPVSFGKSV IFVVVDKFTK YSHFMTLSHP YTALSVAQEL LKLQEVSLHL STAYHPQTDG  780
QTEVVNRVLE TYLRQNSLAD RQFHKLAPRY YGPYKVLDKI GAVAYKLDLP SSAKINSVFH  840
VSQLKKKLGF DNMVGSALPI PSDTPSLTPQ AVLDRRFVKR RNVASTQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	174	RKRKSSRNGNSAQSKDPKEGKSKKQRKCNVENQKNNEKKESK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	6e-55	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO91420