PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO89274
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Trihelix
Protein Properties Length: 288aa    MW: 33470.4 Da    PI: 5.2332
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO89274genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix636.7e-2021107287
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               Wt++e+l Li+a++e++ +l+rg+lk+ +Weev+  +       +    +++ qC++k+e+l++ry+ +++g  +      + +py++ +ea
  OMO89274  21 WTHHETLNLIKAYQEKWYSLKRGQLKASQWEEVAVTVaarcglFDDSSAKTALQCRHKMEKLRRRYRSERQGLASV-----TPWPYYHAMEA 107
               *************************************998888888999*************************94.....57*******85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MSYPSTVADP KSAKKTQPLP WTHHETLNLI KAYQEKWYSL KRGQLKASQW EEVAVTVAAR  60
CGLFDDSSAK TALQCRHKME KLRRRYRSER QGLASVTPWP YYHAMEALEH GPLPISARPL  120
TSFVPTRVRK FYSQNGHEVA NNYHNEGDAN NEVEVEEEED EEDDDDDDGE TQFSKSRSIN  180
YILRRPSVVN RFSGLLSGSR KRVRPEEEGE DEEGVAAAVE VEEETSGLEL AVEIRRFTEK  240
FMRMERKRMD MMQETERFRI EMENRRIEMI LNSQRKIVDV ISESFGSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.13e-57Trihelix family protein