PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO88904

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 356aa MW: 41190.8 Da PI: 8.4023

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO88904	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	1.9e-06	59	79	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg +F+ + +Lk+H+++H OMO88904 59 CEECGATFKKPAHLKQHLQSH 79 *******************99 PP
2	zf-C2H2	18.5	5.6e-06	85	109	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C dC+ s++rk++LkrH+ +H OMO88904 85 FVCVvdDCHASYRRKDHLKRHLLRH 109 899999*****************99 PP
3	zf-C2H2	15.5	5e-05	114	139	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F + n++rH + H OMO88904 114 FKCPieNCNREFAFQGNMTRHVKEfH 139 89********************9988 PP
4	zf-C2H2	17.7	9.8e-06	154	178	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s Lk+H +H OMO88904 154 HVCQeiGCGKVFKFASKLKKHEDSH 178 79*******************9888 PP
5	zf-C2H2	13.6	0.0002	245	269	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C +Fs+ksnL +H ++ H OMO88904 245 KCDfeGCLHTFSTKSNLCQHVKVvH 269 688889***************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MEEEETGSNF KDIRRYFCEY CGIRRSKRTL ITSHILSHHP EEITNGGSQK EGVPPFNICE 60 ECGATFKKPA HLKQHLQSHS LERPFVCVVD DCHASYRRKD HLKRHLLRHQ GKLFKCPIEN 120 CNREFAFQGN MTRHVKEFHD EDSSSPAAGS QKQHVCQEIG CGKVFKFASK LKKHEDSHVK 180 LDSVEAFCSE PSCMKYFTNE QCLKAHVQSC HRYINCEICG KKQREKNIKR HLRSHELGVP 240 SGRIKCDFEG CLHTFSTKSN LCQHVKVVHE ELKPFACCFS GCGMRFSYKH VRDNHEKSGC 300 HVYVAGDFEE SDEQFQSRPR GGRKRTFPTV EMLIRKRVTP LQNDPLMDTW PTQDCS

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MEEEETGSNF KDIRRYFCEY CGIRRSKRTL ITSHILSHHP EEITNGGSQK EGVPPFNICE  60
ECGATFKKPA HLKQHLQSHS LERPFVCVVD DCHASYRRKD HLKRHLLRHQ GKLFKCPIEN  120
CNREFAFQGN MTRHVKEFHD EDSSSPAAGS QKQHVCQEIG CGKVFKFASK LKKHEDSHVK  180
LDSVEAFCSE PSCMKYFTNE QCLKAHVQSC HRYINCEICG KKQREKNIKR HLRSHELGVP  240
SGRIKCDFEG CLHTFSTKSN LCQHVKVVHE ELKPFACCFS GCGMRFSYKH VRDNHEKSGC  300
HVYVAGDFEE SDEQFQSRPR GGRKRTFPTV EMLIRKRVTP LQNDPLMDTW PTQDCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-137	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO88904