PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO88837

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 389aa MW: 43648.1 Da PI: 5.1503

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO88837	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.8	1e-53	38	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 l+pGfrFhPtdeelv++yLk+kv++k++++ ++i+evdiyk ePw+L +++k++++ewyfFs d+ky +g r nratk+gyWkatgkd+ev + +++l OMO88837 38 LAPGFRFHPTDEELVSYYLKRKVSDKPVRF-NAIAEVDIYKQEPWELSdkSRLKTRDQEWYFFSLLDRKYGNGARMNRATKEGYWKATGKDREVRH-NSQL 136 579**********************999.89**********85348899999**********************************.99 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLvf++grap+g +t+Wvmheyrl OMO88837 137 IGMKKTLVFHSGRAPDGLRTNWVMHEYRL 165 ***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MGRENSLAIV PGTPDVPAVA AAAAAAAAAK TSGAATALAP GFRFHPTDEE LVSYYLKRKV 60 SDKPVRFNAI AEVDIYKQEP WELSDKSRLK TRDQEWYFFS LLDRKYGNGA RMNRATKEGY 120 WKATGKDREV RHNSQLIGMK KTLVFHSGRA PDGLRTNWVM HEYRLVEEEL ERLRALQSYV 180 LCRVFHKNNI GPPNGNRYAP FIEEEWDDGS TALVPGLDAG DDVIAGNDAV AGIDVAAAEN 240 ALIEINGVRR IDFEQQDIQY PNEDAPLNYE VPRESLNEKT EDQPKENPHV LPATYDTASL 300 DSVVPPGCMK LINELQNEIH KISVERETLK LEMMSAQAMI NILQSRVDSL SKENEDQKRT 360 NQAIIGVLQL KVDTLSKENE ELKKSNRNV

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MGRENSLAIV PGTPDVPAVA AAAAAAAAAK TSGAATALAP GFRFHPTDEE LVSYYLKRKV  60
SDKPVRFNAI AEVDIYKQEP WELSDKSRLK TRDQEWYFFS LLDRKYGNGA RMNRATKEGY  120
WKATGKDREV RHNSQLIGMK KTLVFHSGRA PDGLRTNWVM HEYRLVEEEL ERLRALQSYV  180
LCRVFHKNNI GPPNGNRYAP FIEEEWDDGS TALVPGLDAG DDVIAGNDAV AGIDVAAAEN  240
ALIEINGVRR IDFEQQDIQY PNEDAPLNYE VPRESLNEKT EDQPKENPHV LPATYDTASL  300
DSVVPPGCMK LINELQNEIH KISVERETLK LEMMSAQAMI NILQSRVDSL SKENEDQKRT  360
NQAIIGVLQL KVDTLSKENE ELKKSNRNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	1e-102	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO88837