PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G10480.2 | ||||||||
Common Name | ANAC050, NAC050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 446aa MW: 50227.1 Da PI: 5.6675 | ||||||||
Description | NAC domain containing protein 50 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.4 | 5.7e-53 | 27 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL +k+k++++ewyfFs dkky +g r nrat++gyWkatgkd+e+ + + AT3G10480.2 27 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSKLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIRR-D 122 579************************999.99**************8544999999**************************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +l g+kktLvf++grap+g +t+Wvmheyrl AT3G10480.2 123 IQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154 99****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-60 | 20 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.442 | 27 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 29 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000005 | anatomy | cultured plant cell | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MGRESLAVVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG 60 EVDIYKHEPW DLAVFSKLKT RDQEWYFFSA LDKKYGNGAR MNRATNKGYW KATGKDREIR 120 RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE TNGSLLDAYV LCRVFHKNNI 180 GPPSGNRYAP FMEEEWADGG GALIPGIDVR VRVEALPQAN GNNQMDQEMH SASKDLININ 240 ELPRDATPMD IEPNQQNHHE SAFKPQESNN HSGYEEDEDT LKREHAEEDE RPPSLCILNK 300 EAPLPLLQYK RRRQNESNNN SSRNTQDHCS STITTVDNTT TLISSSAAAA TNTAISALLE 360 FSLMGISDKK ENQQKEETSP PSPIASPEEK VNDLQKEVHQ MSVERETFKL EMMSAEAMIS 420 ILQSRIDALR QENEELKKKN ASGQAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-49 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-49 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-49 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-49 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-49 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-49 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-49 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-49 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.20114 | 0.0 | flower| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258926_s_at | 1e-169 | ||||
Expression Atlas | AT3G10480 | - | ||||
AtGenExpress | AT3G10480 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00342 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G10480.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT3G10480, AT3G10490, AT1G14920 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G10480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY059795 | 0.0 | AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. | |||
GenBank | AY091262 | 0.0 | AY091262.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_974272.1 | 0.0 | NAC domain containing protein 50 | ||||
Swissprot | Q9SQX9 | 0.0 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | A0A178VJ71 | 0.0 | A0A178VJ71_ARATH; NAC050 | ||||
STRING | XP_010486659.1 | 0.0 | (Camelina sativa) |
Link Out ? help Back to Top | |
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Phytozome | AT3G10480.2 |
Entrez Gene | 820212 |
iHOP | AT3G10480 |
wikigenes | AT3G10480 |