PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO87193
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 425aa    MW: 47867.1 Da    PI: 5.4731
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO87193genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.56.1e-94494243374
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
               +lL ecA+a+s++d +++++lL+ l+elasp+gd  q+la+yf++AL  + ++s++++yk+l++ ++++++ +++ +    f+evsP+ +f+h++aN a+l
  OMO87193  49 RLLRECARAISDKDSSKIHHLLWMLNELASPYGDCDQKLASYFLKALFCKATESGQRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWTTFGHVAANGALL 149
               7899**********************************************************9999985554444444445******************** PP

      GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgEala 203
               ea++ge ++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+  ++  +  ++e+ +r++kfA+ +gvpfefnv+   +rl +l+ e+L v ++Ea+a
  OMO87193 150 EALDGEPKLHIIDISNTLCTQWPTLLEALATRNDDTPHLKLTVVVT-ANIVRSVMKEISQRMEKFARLMGVPFEFNVIsGLNRLGELTKEALGVVEDEAVA 249
               **********************************************.667999************************95567******************* PP

      GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse..sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               +n++ +l rl      +e+ r  v+++++sl Pkvv+vve+ead +s+  +F++ f e+l++y+  f++l+++++++s+e+ ++Ere  +r+iv v+ac +
  OMO87193 250 INCIGALGRLA-----VEE-RGGVIQMFQSLGPKVVTVVEEEADFSSTpyDFVRCFEECLRFYTLYFEMLDESFAPTSNEKLMLERE-CSRSIVRVLACDE 343
               **********8.....444.889**********************776458************************************.89*********87 PP

      GRAS 303 a........errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
               +           er+e+ ++W++rl+e+ F+p+ +s+++++++k+ll+++   g+ +    +++  l+l+Wk++++v++SaW+
  OMO87193 344 EledystsgGECERRERGSQWSDRLKEV-FSPIGFSDDVVDDVKALLKRYR-AGWALAqphQDETGLYLTWKEEAVVWASAWK 424
               5222222222479*************98.*********************9.7777775557799999**************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MHNTTNHHHL NHQQQQQQQQ TQNSHTSTSR SSDSGAGEPC ATGNKWASRL LRECARAISD  60
KDSSKIHHLL WMLNELASPY GDCDQKLASY FLKALFCKAT ESGQRCYKTL TSVAEKSHSF  120
DSARKLILKF QEVSPWTTFG HVAANGALLE ALDGEPKLHI IDISNTLCTQ WPTLLEALAT  180
RNDDTPHLKL TVVVTANIVR SVMKEISQRM EKFARLMGVP FEFNVISGLN RLGELTKEAL  240
GVVEDEAVAI NCIGALGRLA VEERGGVIQM FQSLGPKVVT VVEEEADFSS TPYDFVRCFE  300
ECLRFYTLYF EMLDESFAPT SNEKLMLERE CSRSIVRVLA CDEELEDYST SGGECERRER  360
GSQWSDRLKE VFSPIGFSDD VVDDVKALLK RYRAGWALAQ PHQDETGLYL TWKEEAVVWA  420
SAWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-139GRAS family protein