PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86034
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 324aa    MW: 36198.6 Da    PI: 5.8878
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86034genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.5e-35271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+++ll++i+
      OMO86034  27 FLTKTYQLVDDHTIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDFFRRGERRLLCEIQ 114
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
      OMO86034 115 RRKI 118
                   *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MAPPPVEQNG EATTAAAESQ RSVPTPFLTK TYQLVDDHTI DDVISWNDDG STFIVWNPTV  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSND FFRRGERRLL CEIQRRKISS  120
ATAVPMMIPP VTVAAIPIAK PILSPSNSGD EQSPVLSSTS SPSRPGQTGT VTAELMEENE  180
KLRKENVKLN KQLAEMKSLC NNIFTLMSNY ATSQSESSYS ETKPLDLLPA KRLSSEGEEA  240
VEEETSPRLF GVPIGGVKRA REEGEGVAAV DETQLQLQQP SRNGKEKIKS EPLDCQNAGR  300
DGDRGNQDTP WLRQLHRANQ RVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-103HSF family protein