PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO85463 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | NAC | ||||||||
Protein Properties | Length: 239aa MW: 27024.9 Da PI: 9.5467 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116.1 | 3.5e-36 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 lp GfrFhPtdeelvv+yLk+k+ +l++ +vi+e+d++++ePw+Lp + +++ yfFs r +++++k+ + a+ sgyWk gk+k+v+++ ++++v OMO85463 14 LPIGFRFHPTDEELVVHYLKRKALCLPLPA-SVIPELDVFQAEPWSLPGDL---KDKRYFFSYRYGNESNNKKCKIAAGSGYWKPIGKEKPVMAAgSNQVV 110 699***************************.99***************554...4578********9999999999******************966778* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+k+tL+f + ++++ ++++W +h++rl OMO85463 111 GMKRTLIFCQRNRSNETNSRWHLHQFRL 138 *********9999999**********98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MESQNLVENG GIKLPIGFRF HPTDEELVVH YLKRKALCLP LPASVIPELD VFQAEPWSLP 60 GDLKDKRYFF SYRYGNESNN KKCKIAAGSG YWKPIGKEKP VMAAGSNQVV GMKRTLIFCQ 120 RNRSNETNSR WHLHQFRLVG PLATLYSTQM SKWGLFGEWL VFRVFQKKMK GKKNGAIGNK 180 IQTTIDFTVE DCSAFGPPQP SSPSSSEITE VSNSSNGLDQ EETSANFITC YSNCWVRKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 7e-48 | NAC family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO85463 |