PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85052
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 545aa    MW: 59984.3 Da    PI: 7.0053
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85052genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.28e-34214272160
               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
               +dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  OMO85052 214 VDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 272
               59****************************************.***************85 PP
2WRKY104.65.3e-33377435159
               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
               ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
  OMO85052 377 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDLRAVITTYEGKHNHD 435
               59********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MASSTSFMNM QNNNNMNTSS WGLSDDKFGI EMEIPKFKSL APSSLPFSPS SFLTTPPSAA  60
AAPPFSPTDF LDSPVFFSTS SSILQSPTTG AFSGQTLNWK SNSNSKDNQQ GNNKAELNNN  120
NNNFFDFSFQ PNPRPSSSAI QSSSNIVSVE QSTWNFSEPR KQVETTAGVK SEFAPMNNFS  180
SEMAPNMQVS SSAGYNQYNQ NQSSSQYMRE NRKVDDGYNW RKYGQKQVKG SENPRSYYKC  240
TFPNCPTKKK VERSLDGQIT EIVYKGSHNH PKPQSTRRSS SSHSAACTNS ELSDQSGNDQ  300
TDSFLMQDDN TSGSIGEDDF DHASPISNQN GADDNENEPD AKRWKGENEN EGIIGSGSRT  360
VREPRIVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTTIGCPV RKHVERASHD  420
LRAVITTYEG KHNHDVPAAR GSGYAMNRPA TANNSNASMP IRPSAVPSQP NNNTSYPNSL  480
QTRLPTSASQ VPATLEILHN NGSFGFSGFG RPIGSYMSQA QFSEGAFARA KDEPRDDSFL  540
DGFLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-130WRKY family protein