PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85023
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Trihelix
Protein Properties Length: 280aa    MW: 33828 Da    PI: 8.4875
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85023genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.59.8e-2535117186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               +W+ qe+++ + +r e+++++ ++k++k lWe +s +mre+g++rs++qCk+kw+nl +ryk ++++e +     ++++p++++l+
  OMO85023  35 QWSIQETKEFLLIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCETMEAEA---IRQQFPFYNELQ 117
               7********************************************************************85...56789*****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MEGQQHHHHH HHQHPQLQQQ QHQQPINVDS DRFPQWSIQE TKEFLLIRAE LDRSFMETKR  60
NKLLWEVIST RMREKGYNRS AEQCKCKWKN LVTRYKGCET MEAEAIRQQF PFYNELQAIY  120
SSRMQNILWS ESEGGGTSTG TKKKAVHLSS DEEEEVEETE IEKGSIRKKM KKRKTGSTSG  180
GSNSSNNINS VKEILEDFMR QQMQMEMQWR EAFEARENER RMKEMEWRQT MEALENERIM  240
MDRRWREREE QRRVREEARA EKRDALITAL LNKLRREDHM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173RKKMKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-52Trihelix family protein