PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO84370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 709aa    MW: 76414.3 Da    PI: 5.2462
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO84370genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06278298526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               +C+ f++ G C+ Gd+C +aHg
  OMO84370 278 PCPEFRK-GSCRQGDNCEYAHG 298
               8******.*************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    
MCSGPKRKPS QGGFMEGESY KEDGLPQKFS VLLELSASDD LTGFKSAIEE GGHDIDEPSL  60
WYGRRIGSKK MGFEERTPLL IASMFGSKDV VNYIIESGRV DVNRACGSDG ATALHCAAAG  120
GSFDSAEVVK ILLDASADIN SVDANGNLPG DLIAPARNSA FSLRKKMLEA LLKGSGSGAE  180
IDGLPAELGD EMDGQEQLEN SMPRVSKDGS EKKEYPVDLT LPDIKNGIYG TDEFRMYTFK  240
VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGSCRQG DNCEYAHGIF  300
ECWLHPAQYR TRLCKDETNC NRRVCFFAHK PEELRPLYAS TGSAVPSPRS YSATGSSLDM  360
GSMSPLALGS PSVMIPPTST PPLTPTGSSS PMGGSMWPNQ SSIVPPTLQL PGSRLKSALS  420
ARDMELDMEL LGLGSHRRRQ QQQLIDEISG LSSPTSWNNP LSTASAFSAS GDRAGDLNRF  480
GGVKPTNLED IFGSLDSAIL PQLQGISLDA SAPQLQSPTG VQMRQNINQQ LRASYPANLA  540
SSPVRASPSF GIDASGPTAA AVLSSRSAAF AKRSQSFIER TAVNRHSGFP PPASSASAMP  600
SNLSDWGSPD GKLDWGMQGD ELNKLRKSAS FGFRSSSSNF ANAAPSVSST ADEPDVSWVQ  660
SLVKETSSTG QFSFEDELQQ QQQCHINSGG AEMLPAWVEL YMEQEQMVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein