PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO84370

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 709aa MW: 76414.3 Da PI: 5.2462

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO84370	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg OMO84370 278 PCPEFRK-GSCRQGDNCEYAHG 298 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MCSGPKRKPS QGGFMEGESY KEDGLPQKFS VLLELSASDD LTGFKSAIEE GGHDIDEPSL 60 WYGRRIGSKK MGFEERTPLL IASMFGSKDV VNYIIESGRV DVNRACGSDG ATALHCAAAG 120 GSFDSAEVVK ILLDASADIN SVDANGNLPG DLIAPARNSA FSLRKKMLEA LLKGSGSGAE 180 IDGLPAELGD EMDGQEQLEN SMPRVSKDGS EKKEYPVDLT LPDIKNGIYG TDEFRMYTFK 240 VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGSCRQG DNCEYAHGIF 300 ECWLHPAQYR TRLCKDETNC NRRVCFFAHK PEELRPLYAS TGSAVPSPRS YSATGSSLDM 360 GSMSPLALGS PSVMIPPTST PPLTPTGSSS PMGGSMWPNQ SSIVPPTLQL PGSRLKSALS 420 ARDMELDMEL LGLGSHRRRQ QQQLIDEISG LSSPTSWNNP LSTASAFSAS GDRAGDLNRF 480 GGVKPTNLED IFGSLDSAIL PQLQGISLDA SAPQLQSPTG VQMRQNINQQ LRASYPANLA 540 SSPVRASPSF GIDASGPTAA AVLSSRSAAF AKRSQSFIER TAVNRHSGFP PPASSASAMP 600 SNLSDWGSPD GKLDWGMQGD ELNKLRKSAS FGFRSSSSNF ANAAPSVSST ADEPDVSWVQ 660 SLVKETSSTG QFSFEDELQQ QQQCHINSGG AEMLPAWVEL YMEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MCSGPKRKPS QGGFMEGESY KEDGLPQKFS VLLELSASDD LTGFKSAIEE GGHDIDEPSL  60
WYGRRIGSKK MGFEERTPLL IASMFGSKDV VNYIIESGRV DVNRACGSDG ATALHCAAAG  120
GSFDSAEVVK ILLDASADIN SVDANGNLPG DLIAPARNSA FSLRKKMLEA LLKGSGSGAE  180
IDGLPAELGD EMDGQEQLEN SMPRVSKDGS EKKEYPVDLT LPDIKNGIYG TDEFRMYTFK  240
VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGSCRQG DNCEYAHGIF  300
ECWLHPAQYR TRLCKDETNC NRRVCFFAHK PEELRPLYAS TGSAVPSPRS YSATGSSLDM  360
GSMSPLALGS PSVMIPPTST PPLTPTGSSS PMGGSMWPNQ SSIVPPTLQL PGSRLKSALS  420
ARDMELDMEL LGLGSHRRRQ QQQLIDEISG LSSPTSWNNP LSTASAFSAS GDRAGDLNRF  480
GGVKPTNLED IFGSLDSAIL PQLQGISLDA SAPQLQSPTG VQMRQNINQQ LRASYPANLA  540
SSPVRASPSF GIDASGPTAA AVLSSRSAAF AKRSQSFIER TAVNRHSGFP PPASSASAMP  600
SNLSDWGSPD GKLDWGMQGD ELNKLRKSAS FGFRSSSSNF ANAAPSVSST ADEPDVSWVQ  660
SLVKETSSTG QFSFEDELQQ QQQCHINSGG AEMLPAWVEL YMEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO84370