PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83314

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

AP2

Protein Properties

Length: 320aa MW: 35440.9 Da PI: 8.0733

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83314	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.8	4.6e-12	41	95	1	53
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkl 53 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k+ OMO83314 41 SVYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKK 95 78*****************99998898888888***************986 PP
2	AP2	51.5	2.6e-16	104	155	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g OMO83314 104 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 155 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MAKLSQKTQK DSAAANAAKP TAKVKRTRKS VPRDSPPQRS SVYRGVTRHR WTGRYEAHLW 60 DKNCWNESQN KKGRQGAYDD EEAAAHAYDL AALKKSSGFS RGVSKYRGVA RHHHNGRWEA 120 RIGRVFGNKY LYLGTYATQE EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LRPNHQSDAN 180 SSENAQQDLN SDTNSTLSPK DDIGVGFSIQ PQSYSTSETS ETPLWLGSGG GGGSAANASS 240 ASSALGLLLQ SSKFKEMLER TSVVDSPSPP PEPDVRRRSF PDDIQTYFDC QDSSNYTESD 300 DIFGDLNPFV TPMFHCELDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	2e-62	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMO83314