PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO82827

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRAS

Protein Properties

Length: 291aa MW: 32787.4 Da PI: 4.0468

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO82827	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	46.8	5.1e-15	154	244	3	106
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 +lL + ea++s++ ela+++++ l++ asp+g++++Rl +y+t AL ++ + +++s ++ aa+++f++++P+ +f+h+ aN+aIl OMO82827 154 HLLKAYGEAMESQQIELADEIVSCLKDKASPTGKTLERLLFYLTFALDKQGNY----------LRQES---IKNYEAAFEAFYQIFPYSRFAHFGANSAIL 241 78888899**************************************99876..........34444...6677789999****************** PP GRAS 104 eav 106 ea+ OMO82827 242 EAI 244 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MESHPLWPIY NPLEDSTLDE IGLYFAEMDT QLSSFDQFSN SSVSIEDFSD ISSSTLHPFL 60 GNHFPGILPS LGCGESPSSD QFMLDGSENF PELITYERSN SSQQIFSEDF SISSSSQNLS 120 PISGEVSVEI PSIQAPLVLP SENMEVDEQL VIPHLLKAYG EAMESQQIEL ADEIVSCLKD 180 KASPTGKTLE RLLFYLTFAL DKQGNYLRQE SIKNYEAAFE AFYQIFPYSR FAHFGANSAI 240 LEAIPIDAKE WEESTRKSDF LSELGLAPRR MSRENYEEAK ELVREGKSSY W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-07	GRAS family protein

Link Out ? help Back to Top
Ensembl	OMO82827