PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO82424
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family TCP
Protein Properties Length: 445aa    MW: 48778.9 Da    PI: 7.6544
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO82424genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP69.21.3e-214194558
       TCP  5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58
               +++ ++hTkv+gRdRR+R++++c   +F L++e G+ ++++ti+WLlqqa p 
  OMO82424 41 GKSKGDRHTKVEGRDRRIRIPLTCCSGIFRLTREMGHRTNGQTIQWLLQQARPD 94
              46788**********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    
MDAQMQTLEQ EQQEQQQLLI PENGLQDHGT SSIQPGKKRK GKSKGDRHTK VEGRDRRIRI  60
PLTCCSGIFR LTREMGHRTN GQTIQWLLQQ ARPDLLLPGP MTNPTRLIGS PTQCMSKGRV  120
RATVVQASTV FFDTPATLDK AERLIAGAAA YGSQLVVFPE AFIGGYPRGL SFETVAISAT  180
CSEDNEEFLK YHASAIEVPG PEVDRLAKIA GKYKVHLVMG VVERAGFYLF SAVLFFDSTG  240
RYLGKHRKLM PVASECVVWC SGEKSSLPLY RTAIGKIGGL LYWDNRIPSL RTELYAKGIE  300
IYCAPTSDAK EKWRASMIHI AIEGRCFVLS ANQFCQRKDY PLPPKCIDGD SNGDLSLDTI  360
ICSGGSVIVS PSGTILAGPN YQGESLISAD LDLEEITRAK LELSEVGHSI GPDSIGWAAN  420
RPNPVLFPAA VKTEALDELS WPPPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.18e-19TCP family protein