PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO82070
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 493aa    MW: 55021.6 Da    PI: 4.6888
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO82070genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35601512102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d++l+ +isw  +g+sfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F++gkk+ll++i+
      OMO82070  60 FLSKTFDLVDDPSLDPIISWGPTGESFVVWDPVEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFQRGKKHLLKNIQ 147
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
      OMO82070 148 RRKS 151
                   **98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    
MKPKEEKLSP DSPPNPPQTL PFSSPLMEFE TLTSSAPHES EFISVPQPLE ILQGNPVPPF  60
LSKTFDLVDD PSLDPIISWG PTGESFVVWD PVEFSRLILP RNFKHNNFSS FVRQLNTYGF  120
RKIDTDKWEF ANEAFQRGKK HLLKNIQRRK SPQSQQVGSY LGPSTEAGRS ELEGEVEKLR  180
KEKSMLMQEV VELQQQHQGT AHHVKAVNQR LQAAEQRQKQ MVSFLAKLFQ NPAFLARLRE  240
KKEQGEIGSP RMRRKFARHQ QQLELVNPEP PVQGQIVKYK PDWRNFAISS PPPDLNPMSV  300
EQSPDYLPEG VEGIDLGTEA LPFQVDNEMM VSDELAVAHG YIKTPELAGE GASSLGSEDP  360
HSKGKNVMGL EEEVNPGYFV SFPEDLVKQK STLEFSSPIV ESFAKQEDVW SMGFDATAGM  420
SSSSTELWGN LESYDPGLGV TGGLSDVWDL GFSQAAEDSD IDKWPAGESP FNIPETGNQA  480
GQPGDNRSKK TDP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236244ARLREKKEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-120HSF family protein