PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO81277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 352aa MW: 39551.4 Da PI: 7.1763 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.7e-07 | 90 | 114 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ G C+ G+ C+FaHg OMO81277 90 FKTRMCAKFRM-GACRNGEGCNFAHG 114 69*********.*************9 PP | |||||||
2 | zf-CCCH | 28.9 | 1.9e-09 | 150 | 173 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 +++lC+ f+ + +C+yGdrC+F H OMO81277 150 RMKLCKKFYNGEECPYGDRCNFLH 173 678*******66************ PP | |||||||
3 | zf-CCCH | 40.4 | 4.8e-13 | 237 | 262 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC + tG+C++Gd+C+FaHg OMO81277 237 WKTKLCVKWETTGYCPFGDKCHFAHG 262 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence |
MSYSDSFPSF GKPPQPTYPG SDAIGIWPEF GMNDGQFDPH SDFEQPQHQP PFKRPRHSDD 60 SQSNVLQCTP TNPRMPLNPP VNKGTTNIFF KTRMCAKFRM GACRNGEGCN FAHGVEDLRQ 120 PPPNWQELVG GREEERPAGN WDDDQRIIQR MKLCKKFYNG EECPYGDRCN FLHEDPSKFR 180 DDSGRFRECS AISIGTTAPP TGPVIPPDQL EVNRPVIVSN TVSDAFRGGN NMKPVYWKTK 240 LCVKWETTGY CPFGDKCHFA HGHTELQGFG GRVDGDLGNS GMPRNGSIST KIYNLPVNDA 300 PPVTATIPSI NEETQAKKCL FKWKGARKIN RIYGDWLDDM PLVHNLPNQV ES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-104 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO81277 |