PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO81277
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 352aa    MW: 39551.4 Da    PI: 7.1763
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO81277genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-0790114126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +kt+ C  f+  G C+ G+ C+FaHg
  OMO81277  90 FKTRMCAKFRM-GACRNGEGCNFAHG 114
               69*********.*************9 PP

2zf-CCCH28.91.9e-09150173225
               -S---SGGGGTS--TTTTT-SS-S CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
               +++lC+ f+ + +C+yGdrC+F H
  OMO81277 150 RMKLCKKFYNGEECPYGDRCNFLH 173
               678*******66************ PP

3zf-CCCH40.44.8e-13237262126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +kt+lC  +  tG+C++Gd+C+FaHg
  OMO81277 237 WKTKLCVKWETTGYCPFGDKCHFAHG 262
               8************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MSYSDSFPSF GKPPQPTYPG SDAIGIWPEF GMNDGQFDPH SDFEQPQHQP PFKRPRHSDD  60
SQSNVLQCTP TNPRMPLNPP VNKGTTNIFF KTRMCAKFRM GACRNGEGCN FAHGVEDLRQ  120
PPPNWQELVG GREEERPAGN WDDDQRIIQR MKLCKKFYNG EECPYGDRCN FLHEDPSKFR  180
DDSGRFRECS AISIGTTAPP TGPVIPPDQL EVNRPVIVSN TVSDAFRGGN NMKPVYWKTK  240
LCVKWETTGY CPFGDKCHFA HGHTELQGFG GRVDGDLGNS GMPRNGSIST KIYNLPVNDA  300
PPVTATIPSI NEETQAKKCL FKWKGARKIN RIYGDWLDDM PLVHNLPNQV ES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-104C3H family protein