PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO80725

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HD-ZIP

Protein Properties

Length: 273aa MW: 31265.6 Da PI: 4.4053

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO80725	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.7e-21	65	118	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k OMO80725 65 KKRRLTPEQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 118 5678*************************************************9 PP
2	HD-ZIP_I/II	135.6	1.7e-43	64	156	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+e+L++e+++ OMO80725 64 EKKRRLTPEQVHMLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLANYDSIVKENEKLKSEVAS 156 69**************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MESGRLFFNP STCQGNMLYL GNGESFFRGA RTMISMEETS KKRPFFSLQE ELYDEEYYDE 60 QSPEKKRRLT PEQVHMLEKS FETENKLEPE RKTQLAKKLG LQPRQVAVWF QNRRARWKTK 120 QLERDYDLLK SSYDSLLANY DSIVKENEKL KSEVASLTEK LQAKDATAEP VVSQKVELLP 180 VETVSSTQFN VKVEDRLSTG SAGSAVVDED APQLVDSGDS YFPNDEYPGC VCPIDGAQSE 240 EDDGSDDGRS YFSNVFTATE QQHEEPLGWW VWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-91	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OMO80725