PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79967

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 416aa MW: 48517.1 Da PI: 9.0852

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79967	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.2	4.4e-23	99	196	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+ +v++Li+a++++e++ ++++ +k ++W+ vsk m ++gf++sp+qC++k+++lnkryk++ ++ +++ +++++++ +++d ++ OMO79967 99 KWTEPMVKLLINAVSYVEKDASSDClggmrrkpsmlQKIGKWRCVSKLMVRKGFHVSPQQCEDKFNDLNKRYKRLIDILGRGiSCKVVKNPKLLDTMD 196 7********************9999999999999******************************************99********9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MEGNFTSDGN VIPDGQAFAL SDSQDPLQFH QCLNPQIFQQ GPQFQNISSF RLENMKEIEK 60 PYEGVKKLKS DDDGMSFDEG GDGFNGGKEK SDSLWQRVKW TEPMVKLLIN AVSYVEKDAS 120 SDCLGGMRRK PSMLQKIGKW RCVSKLMVRK GFHVSPQQCE DKFNDLNKRY KRLIDILGRG 180 ISCKVVKNPK LLDTMDVSDK AKEEVKKILN SKNLFYEEMC SYHNGNRLHL PHDMEVQRSL 240 QWTIRSRDNY KPNLLRQHED RDEYDKKRQD TGAGEQTEET KGDRGTFRFE ELSSNRSKQM 300 NVMKDEIVGN PLTTKECGIK SGAAKQDDRN NLNYGHPKDS SADGLQEQWM AFRLLQLKEQ 360 KMQIQVQKLA LEMQRYKWKR INWKKDKDLD KMRLDNHRMK LENEWLAFEL KPDKSL

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MEGNFTSDGN VIPDGQAFAL SDSQDPLQFH QCLNPQIFQQ GPQFQNISSF RLENMKEIEK  60
PYEGVKKLKS DDDGMSFDEG GDGFNGGKEK SDSLWQRVKW TEPMVKLLIN AVSYVEKDAS  120
SDCLGGMRRK PSMLQKIGKW RCVSKLMVRK GFHVSPQQCE DKFNDLNKRY KRLIDILGRG  180
ISCKVVKNPK LLDTMDVSDK AKEEVKKILN SKNLFYEEMC SYHNGNRLHL PHDMEVQRSL  240
QWTIRSRDNY KPNLLRQHED RDEYDKKRQD TGAGEQTEET KGDRGTFRFE ELSSNRSKQM  300
NVMKDEIVGN PLTTKECGIK SGAAKQDDRN NLNYGHPKDS SADGLQEQWM AFRLLQLKEQ  360
KMQIQVQKLA LEMQRYKWKR INWKKDKDLD KMRLDNHRMK LENEWLAFEL KPDKSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-91	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO79967