PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79547

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 636aa MW: 71372.3 Da PI: 5.0748

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79547	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	440	486	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR++iN+++ L++l+P++ K++K++iL ++eY+++L+ OMO79547 440 NHVLSERRRREKINERLMILKSLVPSN-----SKVDKVSILDDTIEYLQDLE 486 68889*******************8.....7**************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MATGVENQDR VPENLKKKLA LAVRNIQWSY AIFWSISARQ PGVLEWGDGY YNGDIKTRKT 60 VQAVELDADQ LALQRSEQLR ELYESLSAGE SSPQPRRPSA ALSPEDLTDT EWYYLVCMSF 120 VFNIGQGLPG RTLATGQPIW LCNAHYAESK VFSRSLLAKT VVCFPFSGGV IELGATDLVL 180 EDLSLIQRIK TSFLGTPHQI VSNQSIPVAG SMGNDNDLAC PAHDPQILET KLSPLLGCEQ 240 LEMASPDDSS DGYEPNQLQE EEPFMVEGIN GGASQVQSGQ LMDEEFSNCV HHSLNTSDCI 300 SQTFVDHGNA VPLLHKGEKD NDNNGLQDVQ ECNQTRLTSL DLRSDDLHYH TVLTALLKTS 360 HQLILGPHFR NSNNESSFIS WKNTSLVKSQ KTRGETSQKL LKKILFEVPH MHDKELLDSP 420 EDNGIRNAAF RPEADEMYGN HVLSERRRRE KINERLMILK SLVPSNSKVD KVSILDDTIE 480 YLQDLERRIE ELESSREITE SEARTKRKPP DHVERTSDNY GNNKISNGKK SFLNKRKACD 540 IDEAELEVDF VGLKDNNITV SMNKKDFVIE FRCPWREGIL FEIMDELSII NLDCHSVQST 600 TTEGILTVNI KSKYKGVGVA SAGTIKQALQ RVAWKC

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MATGVENQDR VPENLKKKLA LAVRNIQWSY AIFWSISARQ PGVLEWGDGY YNGDIKTRKT  60
VQAVELDADQ LALQRSEQLR ELYESLSAGE SSPQPRRPSA ALSPEDLTDT EWYYLVCMSF  120
VFNIGQGLPG RTLATGQPIW LCNAHYAESK VFSRSLLAKT VVCFPFSGGV IELGATDLVL  180
EDLSLIQRIK TSFLGTPHQI VSNQSIPVAG SMGNDNDLAC PAHDPQILET KLSPLLGCEQ  240
LEMASPDDSS DGYEPNQLQE EEPFMVEGIN GGASQVQSGQ LMDEEFSNCV HHSLNTSDCI  300
SQTFVDHGNA VPLLHKGEKD NDNNGLQDVQ ECNQTRLTSL DLRSDDLHYH TVLTALLKTS  360
HQLILGPHFR NSNNESSFIS WKNTSLVKSQ KTRGETSQKL LKKILFEVPH MHDKELLDSP  420
EDNGIRNAAF RPEADEMYGN HVLSERRRRE KINERLMILK SLVPSNSKVD KVSILDDTIE  480
YLQDLERRIE ELESSREITE SEARTKRKPP DHVERTSDNY GNNKISNGKK SFLNKRKACD  540
IDEAELEVDF VGLKDNNITV SMNKKDFVIE FRCPWREGIL FEIMDELSII NLDCHSVQST  600
TTEGILTVNI KSKYKGVGVA SAGTIKQALQ RVAWKC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	445	450	ERRRRE
2	446	451	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO79547