PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79279
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ZF-HD
Protein Properties Length: 342aa    MW: 37069.6 Da    PI: 7.6591
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79279genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.72.5e-3261116458
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                  + Yk+ClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFH re+e
     OMO79279  61 ISYKKCLKNHAASLGGHALDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHLREPE 116
                  68******************************9*******************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MDIAPTSTTP LSSTPKSPEQ ESETPTRIQP TKPVFTNGVL KRHQPHHHHH HHHPHAPPIV  60
ISYKKCLKNH AASLGGHALD GCGEFMPSPT ATPTDPTSLK CAACGCHRNF HLREPEDPPP  120
TTATATIEYQ PHHRHHPPPP ASQPHRSPNS ASPPPISSSY YPSAPHMLLA LSGGLTGALD  180
NSHNNSHLPA GAATTGGAVT PNSTNLGSNS KKRFRTKFTQ VQKDKMLEFA ERVGWKMQKR  240
DEELVQEFCS EVGVDRGVLK VWMHNNKNTF GKKDQSNGNG GVNGSGNNNN IDSGLNHEDD  300
NNESHENNNN NNNNNIHGQN LNHHFESDSV AHVGTNGSSS SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39760.12e-29ZF-HD family protein