PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79116
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 332aa    MW: 37466 Da    PI: 8.2972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79116genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +++ +v  +G g+W++++++ g++R++k+c++rw +yl
         OMO79116 14 RGLWTAEEDARILAYVSNHGIGNWTLVPKKAGLNRCGKSCRLRWTNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding49.59.6e-1669110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T++E++ +++++++ G++ W++Ia++++ gRt++++k++w++
         OMO79116  69 SFTPQEEQVIINLHELIGSR-WSLIAKHLP-GRTDNDVKNYWNT 110
                      79******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MGRPPCCDKS NVKRGLWTAE EDARILAYVS NHGIGNWTLV PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHESF TPQEEQVIIN LHELIGSRWS LIAKHLPGRT DNDVKNYWNT KLRKKLSKMG  120
IDPITHKPIS QVLSDYGNIN NLPRTENFSN SFGKNFRNKS IPNRNIQNNC MVQKPMMEQV  180
QDTNKHVPWD ISSQFQAVIS IQPNMLSTDQ VTSSCSSSSA STTAFKASSE SQITPTSSSP  240
FSWSEFLLTD PLLHETSPSH QGQEQKFPPM SSPRTSSTMK HKEESHCRAN GEVEAFGAYD  300
DSSASSFVDA ILVRDSEIRS QFPEFLHVSF DD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.16e-82MYB family protein