PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79042
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ZF-HD
Protein Properties Length: 321aa    MW: 35216 Da    PI: 8.1344
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79042genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.39e-3455111358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v YkeClkNhAaslGgha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr++ 
     OMO79042  55 VVAYKECLKNHAASLGGHALDGCGEFMPSPSASlTDPSSLRCAACGCHRNFHRRDPY 111
                  689*****************************99********************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MELINTKTSP YTQTESSSET QPSPTAINTT KTKSLLLLRN CSNNNIFFHH NQEMVVAYKE  60
CLKNHAASLG GHALDGCGEF MPSPSASLTD PSSLRCAACG CHRNFHRRDP YDGNISPAAY  120
IHHLPPPPPL PNPASSSPSP THSHSPTNTP PSPVPYSYYS SAPHMLLALS TGYSGPLDEY  180
HHHLSHSNPT VGKLEKNNNN NNSNNPSGKK RSRTKFSKEQ KEKMHAFAEK LGWRMPRNEE  240
KLMEEFCNGV GVDRGVFKVW MHNNKNVLGK KEILGVGNLN LDSNHDEDFN GNGNASHHIH  300
NNEGSNIQLH VSAINGSSSA S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-60ZF-HD family protein