PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78877
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 285aa    MW: 31950 Da    PI: 5.7921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78877genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.96.3e-26291652128
       NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                pGfrF P++ee++++yL kk    +     +   + i+e+++y+++P dLp+     + ++ ++ ++ + +++k  + kr++ra k g+W++ gk ++v+
  OMO78877  29 LPGFRFYPSEEEILQHYLSKKNGCGTagnadVYGYDLINELNLYDYQPADLPEgacfLHGNQGRKRHWLCYTESKGGRRKRTRRA-KGGFWRKIGKVRHVF 128
               69*******************9888855544333458***************556653334555778888888888899999997.78************* PP

       NAM  94 sk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
               +  ++ l g+++ +vf++  + + +++t+W+m ey+l
  OMO78877 129 DDgGNILLGTRTKFVFFEInSVRAAVRTQWTMYEYAL 165
               *8555669*********762666778*********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MFNDSDSILP LVEIGKADSS RARSLCHILP GFRFYPSEEE ILQHYLSKKN GCGTAGNADV  60
YGYDLINELN LYDYQPADLP EGACFLHGNQ GRKRHWLCYT ESKGGRRKRT RRAKGGFWRK  120
IGKVRHVFDD GGNILLGTRT KFVFFEINSV RAAVRTQWTM YEYALLHHLK ASFVLCRVFV  180
KSPAGNSISE NILSSSADIS LSAVGHVGIQ HDESVTPDIL EPEINGDHFT KELEDQTASR  240
PVSVASFEFA SGISPDLPND LVGYQLADDL MSILEEDFLE LDDLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192109RKRHWLCYTESKGGRRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.19e-17NAC family protein