PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO78581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22264.2 Da PI: 7.8559 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.2 | 1.6e-39 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+aela+++++ OMO78581 11 PCGACKFLRRKCVKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPAHKRVDAVVTLCYEALARVRDPVYGCVAHIFTLQQQVVNLQAELAYIQAR 111 7***********************9989********************************************************************99875 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence |
MSGNNGGGGG PCGACKFLRR KCVKGCIFAP YFDSEQGTAH FAAVHKVFGA SNASKLLLRI 60 PAHKRVDAVV TLCYEALARV RDPVYGCVAH IFTLQQQVVN LQAELAYIQA RLSTLQRLPL 120 LPPAQSPSPT SLHSSSEIGS DLVSSSNMSI NFDPTQHQHT SFELTSFPNP FDQEVENEEE 180 LQALAREFVS RYLPGVRFRP SNSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-64 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO78581 |