PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO78542 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 213aa MW: 23510.9 Da PI: 8.1575 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 242.1 | 1.1e-74 | 11 | 176 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvssek 100 d+ s s+q+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++ a + hl++s+ + llee +++ nl n+ + + + ++ OMO78542 11 DHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHSFFTPqnLLEEIRSAPPNLLINQPNPNDSI--LPA-- 107 78899*****************************************999999998899999999987654589999999999888776655443..333.. PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ee+p++p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl OMO78542 108 -IRGGVEEIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 176 .357889****999******************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence |
MSSSSAAFSP DHLSPSDQLC YVHCNFCDTV LAVSVPCTSL FKTVTVRCGH CTNLLSVNMR 60 GLLLPAANQL HLGHSFFTPQ NLLEEIRSAP PNLLINQPNP NDSILPAIRG GVEEIPKPPV 120 VNRPPEKRQR VPSAYNRFIK DEIQRIKAGN PDISHREAFS AAAKNWAHFP HIHFGLMPDQ 180 PVKKTNVRQQ EGEDVLMKDG FFAAPTNVGI APY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-99 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO78542 |