PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78488
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 528aa    MW: 59344 Da    PI: 4.863
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78488genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.41.6e-1111515211374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkfshlt 97 
               lv+lLl+cAeav  +d++la+++L+++   a+p gd++qR+  +f+ +L++rl+   +++    + s+ + +      +e++ a++l+++++P++ f++++
  OMO78488 151 LVHLLLACAEAVGCRDTQLANSMLTQIWASATPWGDSLQRVSYCFATGLKSRLSL-LQNVNGNGTISHCAMDVplmtRQEKMEAFHLLYQTTPYIAFGFMA 250
               68**************************************************987.33443333333333222334499999******************* PP

      GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvk 197
               aN+aI +a++g++ +HiiD+++ + lQWp+L+++LasRpeg+p+lRiTg+ s++  s  ele+  + L+  A++lg+ +efn++ +  + + l+ e+L+++
  OMO78488 251 ANEAIRQAAQGKDSLHIIDLGMDHTLQWPSLIRTLASRPEGAPTLRITGLTSHQ--SLLELEASMKSLTMDASSLGIALEFNMISEPvTPSLLTRENLNLR 349
               ****************************************************55..9**************************7443588999******** PP

      GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
               +gEal +n++ +lh+ ++es  + +   ++L+++k+lsP +++vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s +r+k+Er  +++ei+n+v
  OMO78488 350 EGEALFINSITHLHKYVKESRGSLK---AILQAIKKLSPALITVVEQDANHNGPFFLGRFLESLHYYSAVFDSLEASLPRHSPQRMKIERLHFAEEIRNIV 447
               *****************88776666...9************************************************************************ PP

      GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               a eg++r+erhe++ +Wr++l++aGF+ + l+    +qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  OMO78488 448 AYEGSDRIERHERADQWRRQLGRAGFQVMGLK--CLSQARMMLSVYGCDGYTLGSEKGCLLLGWKGRPIMLASAWQ 521
               ****************************9985..89***************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MEGINGWLSF PLYESFNHDF AIRRFCPARV ELEQGEWEEA MNYEIDSFSP DDHDTGSTPH  60
LAASEVDDLV DSFINMDDHV DDNDKDDQNS KKEQDFHDFQ DGIDFVEFPM MMMEGDDHEL  120
ERSGSCEDFG AHEMVPSVEE VSHGVDQGLH LVHLLLACAE AVGCRDTQLA NSMLTQIWAS  180
ATPWGDSLQR VSYCFATGLK SRLSLLQNVN GNGTISHCAM DVPLMTRQEK MEAFHLLYQT  240
TPYIAFGFMA ANEAIRQAAQ GKDSLHIIDL GMDHTLQWPS LIRTLASRPE GAPTLRITGL  300
TSHQSLLELE ASMKSLTMDA SSLGIALEFN MISEPVTPSL LTRENLNLRE GEALFINSIT  360
HLHKYVKESR GSLKAILQAI KKLSPALITV VEQDANHNGP FFLGRFLESL HYYSAVFDSL  420
EASLPRHSPQ RMKIERLHFA EEIRNIVAYE GSDRIERHER ADQWRRQLGR AGFQVMGLKC  480
LSQARMMLSV YGCDGYTLGS EKGCLLLGWK GRPIMLASAW QLHNVSSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-81GRAS family protein