PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO78449 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23767.8 Da PI: 7.7962 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.8 | 5e-40 | 18 | 119 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l ++k++ OMO78449 18 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQAQLMQAKAQ 118 7*************************99*******************************************************************999987 PP DUF260 101 l 101 l OMO78449 119 L 119 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MANSSGSGST AATGTGSPCG ACKFLRRKCA SDCIFAPYFC SEQGPARFAA IHKVFGASNV 60 SKLLLHIPAH DRCEAVVTIA YEAQARIRDP VYGCVAHIFA LQQQVAYLQA QLMQAKAQLA 120 QSAMNNSHNI DNQWQGNLSG GGVPSIPSYP SYMNPISPQS SLESVEFNSS SDSMNMQDIQ 180 SRDQDHEFSF QQGYPHKKKP YNPDLGELQA LALRMMRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 5e-55 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO78449 |