PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78030
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 264aa    MW: 30918.5 Da    PI: 8.6673
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78030genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.4e-141372151390
               TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
        B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
               s r+vlp +f+++h   +k +s ++tl   +g++W+  +     +kk  r  + +GW+eF +  +Lk gD++v +++++ ++
  OMO78030 137 SYRVVLPTEFITKHlA-EK-KSSKVTLCAMDGKKWNASYFGyktNKKYTRANIFDGWREFMQHYQLKLGDVCVKEYMDE-DK 215
               5689**********53.43.55699999999*****9994445544444444557********************9874.33 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MDSQKPHFCK IVLGLGIRYS ILRFPRDFIR RQGEISSPVE LKVADGCRFQ VEVKRIQGEL  60
CMVNWRPFAE HYWMKHGHFL LFEYQGHSIF RVFIFDPSAT EIDYGLFGVF EEETIPLQKA  120
AAFQTDNPTF VVEMQPSYRV VLPTEFITKH LAEKKSSKVT LCAMDGKKWN ASYFGYKTNK  180
KYTRANIFDG WREFMQHYQL KLGDVCVKEY MDEDKNIVIL QVSNGKTWVV DFSILSVPSG  240
QQKPQFNGEN WRKFAQYNHL DVGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-16B3 family protein