PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76974

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 486aa MW: 56692.3 Da PI: 6.6737

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76974	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31	8.4e-10	68	125	1	59
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetr 59 ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++ +kk t +++r r++++ OMO76974 68 EYYGNFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRSGFAPMRKKPTGEHHRDRKSDE 125 59******************8888.*****************9888888887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSVASEL VKTESVQSEA MVAPYVGMVF 60 KTDEEAFEYY GNFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPMR KKPTGEHHRD 120 RKSDETPRSF AWALQTFIRF MKGRCPQTIL TDLDPGLRDA IRSELLNTKH VTPIWHILPK 180 VSSWFPLQLG SQYAEFKSEF DALYHLESTE DFELRWNQMV SIFGLGSDKH IALLYSLRTS 240 WVLSYVRGFF LARMATTSYS KSVDAFLKGI FSAQTCLRRF FEQVGVAAST QNQPHQEMQY 300 MHMKTCLPIE EHSRQILTPF AFNVLQHELI VSMQYAASEM ANGSYLVRHF RKVDGESLVI 360 WIPEDEQIHC SCKEFESSGI LCRHALRVFI DKNYFQLPEK YFVSRWRRDS SLVFYDDHSI 420 HDNDDEWFQE FQSLTETLFT ESSLTKERSD YVRRELTKEL TRLLNEVRDM PESDGAPMDF 480 TLSPTG

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSVASEL VKTESVQSEA MVAPYVGMVF  60
KTDEEAFEYY GNFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPMR KKPTGEHHRD  120
RKSDETPRSF AWALQTFIRF MKGRCPQTIL TDLDPGLRDA IRSELLNTKH VTPIWHILPK  180
VSSWFPLQLG SQYAEFKSEF DALYHLESTE DFELRWNQMV SIFGLGSDKH IALLYSLRTS  240
WVLSYVRGFF LARMATTSYS KSVDAFLKGI FSAQTCLRRF FEQVGVAAST QNQPHQEMQY  300
MHMKTCLPIE EHSRQILTPF AFNVLQHELI VSMQYAASEM ANGSYLVRHF RKVDGESLVI  360
WIPEDEQIHC SCKEFESSGI LCRHALRVFI DKNYFQLPEK YFVSRWRRDS SLVFYDDHSI  420
HDNDDEWFQE FQSLTETLFT ESSLTKERSD YVRRELTKEL TRLLNEVRDM PESDGAPMDF  480
TLSPTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-107	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO76974