PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76663
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 419aa    MW: 48615.3 Da    PI: 9.5897
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76663genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.93.9e-111252343
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
              +en+  r   f  R+ g+ KKA+EL +LC+++ +++i++++
  OMO76663 12 VENEKTRAAIFNMRLSGLKKKAKELTILCNVRLCMVILGPK 52
              799999*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MGRGGKLRLK LVENEKTRAA IFNMRLSGLK KKAKELTILC NVRLCMVILG PKLKNKPFKV  60
VIWRDDHDEV KSMILDCKRS TFEKKIFTIS DYMNLRRKKV ENEIAHVRRA NFKAKFPTWD  120
DRFDNLSPKQ PFPPKNLCDN FLESHFPLKT LNPFDHPQNS LDYGLFTGQH SGNYVESHHL  180
PIKSLNPLDR HFHEKSLDYG LIMGQHSGNH IQSHDHLPLT TRNQFDHIQA FPHKNYGLFM  240
EPPPIVSTHS QSDENLLNLS LNLNPNKNRL NPIDHKQLSM PMMNNVLDFN FQPGASSSIN  300
QKPMTMFSMM NDHLDHFNVQ HSGLASSSSR NIPNTLSFSP LRSSFGSHHD HHGIQAAHHD  360
SMPTMQDNVM FKQPKPYDAW FHPPSMQPDH QASNFDLQQF LRNSESDPRF RSEFLEFYH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.13e-12M-type_MADS family protein