PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO76424 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LSD | ||||||||
Protein Properties | Length: 146aa MW: 16234.4 Da PI: 6.3331 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.6 | 1.7e-12 | 56 | 80 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrG + V+C++C t+ OMO76424 56 CGSCRELLSYPRGTRQVKCSCCETI 80 **********************997 PP | |||||||
2 | zf-LSD1 | 43.7 | 4.4e-14 | 94 | 120 | 1 | 25 |
zf-LSD1 1 Cg..gCrtlLsYPrGApsVRCalCdtV 25 Cg +C lL+YP+GApsVRC++C++V OMO76424 94 CGrdNCAMLLMYPYGAPSVRCSSCQFV 120 78889********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence |
MENKETETQH QPKGEQQVKE EEEEGPPPGW QSIPPPAAKH PPPQQPPSTE MAQMVCGSCR 60 ELLSYPRGTR QVKCSCCETI NFVLEAHQVG LVKCGRDNCA MLLMYPYGAP SVRCSSCQFV 120 TEIGEHNRRP PWSVQQGQPT PPNAVH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-41 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO76424 |