PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76401

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 690aa MW: 76315.3 Da PI: 6.7221

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76401	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	150	169	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffar G+C G++C+F H OMO76401 150 ICDFFAR-GWCIKGSSCRFLH 169 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MSVSTSAAVP RAAKEDERRA TFVTEQEAHS SDMDIDDDDD KGYEDLHCSS RNEDPCTNYE 60 DSKRQISGKQ PAKEKASHEF VVSGKDGRSI LERKVPENNN EHREKSKQMN AQAEDDIRRL 120 KSRSAAQQNS TGSLSPDVEF NRGNKRPALI CDFFARGWCI KGSSCRFLHI KDSENNPRNQ 180 SEENVDAADG KKAVQLDEGF RNAAEGSISP GSTVTPPSSA GNKIALSSHL LSERVSPLLH 240 DQNQKLHSFH EISKFPLLRS KDKSVGTSLA SWQLSACKGD FGPSKDVMQN SVGHNFPADI 300 HAKPASLIDR DGSSFRNSFL PEYKSSLSGS VASLGNSYSE NQAYRVSTWI KSLPFGPSLS 360 ASLGAERVLE SDRERHTSRL SSLLQSSSPF SRSEPEKFPL NDISGDPLHF ADYRIKISSD 420 DWEPSVPFRP SFFVTSTISS PQSQYDPLRD GMDLSNAGER SLKFSFSSQG PAILNGAYPP 480 IYGDSTSTGH VVPECNGDKK AASSNRYHEN LVNNTCHTSE KDSLTTDAND GTSAADMQNG 540 TLPKEEISSV ASHVKDISEI NKIATDHDGR YQRDGARCKN ELKVDRAREK NEIDVEHKAD 600 GNTFKESKLM RHFHAALVDL IKELLKPTWC EGHLSKDAHN TIVRKAVDKV IGTIQPDQIP 660 TFESVKHYLS FSQPKIAKLV EGYIDKYRKS

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MSVSTSAAVP RAAKEDERRA TFVTEQEAHS SDMDIDDDDD KGYEDLHCSS RNEDPCTNYE  60
DSKRQISGKQ PAKEKASHEF VVSGKDGRSI LERKVPENNN EHREKSKQMN AQAEDDIRRL  120
KSRSAAQQNS TGSLSPDVEF NRGNKRPALI CDFFARGWCI KGSSCRFLHI KDSENNPRNQ  180
SEENVDAADG KKAVQLDEGF RNAAEGSISP GSTVTPPSSA GNKIALSSHL LSERVSPLLH  240
DQNQKLHSFH EISKFPLLRS KDKSVGTSLA SWQLSACKGD FGPSKDVMQN SVGHNFPADI  300
HAKPASLIDR DGSSFRNSFL PEYKSSLSGS VASLGNSYSE NQAYRVSTWI KSLPFGPSLS  360
ASLGAERVLE SDRERHTSRL SSLLQSSSPF SRSEPEKFPL NDISGDPLHF ADYRIKISSD  420
DWEPSVPFRP SFFVTSTISS PQSQYDPLRD GMDLSNAGER SLKFSFSSQG PAILNGAYPP  480
IYGDSTSTGH VVPECNGDKK AASSNRYHEN LVNNTCHTSE KDSLTTDAND GTSAADMQNG  540
TLPKEEISSV ASHVKDISEI NKIATDHDGR YQRDGARCKN ELKVDRAREK NEIDVEHKAD  600
GNTFKESKLM RHFHAALVDL IKELLKPTWC EGHLSKDAHN TIVRKAVDKV IGTIQPDQIP  660
TFESVKHYLS FSQPKIAKLV EGYIDKYRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-50	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO76401