PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 690aa    MW: 76315.3 Da    PI: 6.7221
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76401genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07150169525
               --SGGGGTS--TTTTT-SS-S CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
               +C+ffar G+C  G++C+F H
  OMO76401 150 ICDFFAR-GWCIKGSSCRFLH 169
               6******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    
MSVSTSAAVP RAAKEDERRA TFVTEQEAHS SDMDIDDDDD KGYEDLHCSS RNEDPCTNYE  60
DSKRQISGKQ PAKEKASHEF VVSGKDGRSI LERKVPENNN EHREKSKQMN AQAEDDIRRL  120
KSRSAAQQNS TGSLSPDVEF NRGNKRPALI CDFFARGWCI KGSSCRFLHI KDSENNPRNQ  180
SEENVDAADG KKAVQLDEGF RNAAEGSISP GSTVTPPSSA GNKIALSSHL LSERVSPLLH  240
DQNQKLHSFH EISKFPLLRS KDKSVGTSLA SWQLSACKGD FGPSKDVMQN SVGHNFPADI  300
HAKPASLIDR DGSSFRNSFL PEYKSSLSGS VASLGNSYSE NQAYRVSTWI KSLPFGPSLS  360
ASLGAERVLE SDRERHTSRL SSLLQSSSPF SRSEPEKFPL NDISGDPLHF ADYRIKISSD  420
DWEPSVPFRP SFFVTSTISS PQSQYDPLRD GMDLSNAGER SLKFSFSSQG PAILNGAYPP  480
IYGDSTSTGH VVPECNGDKK AASSNRYHEN LVNNTCHTSE KDSLTTDAND GTSAADMQNG  540
TLPKEEISSV ASHVKDISEI NKIATDHDGR YQRDGARCKN ELKVDRAREK NEIDVEHKAD  600
GNTFKESKLM RHFHAALVDL IKELLKPTWC EGHLSKDAHN TIVRKAVDKV IGTIQPDQIP  660
TFESVKHYLS FSQPKIAKLV EGYIDKYRKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-50C3H family protein