PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76344
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 281aa    MW: 31730.6 Da    PI: 8.3652
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76344genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.22.5e-2815110195
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
               aCaaCk++r+kC ++C++ p +pa+ + +f+ v+++FG++n+++ l++l+++e r++a+++l +eA a+ +dP++G +gv+++ ++++e lk++l 
  OMO76344  15 ACAACKHQRKKCLSNCIFIPFYPATGADSFKEVQRIFGVKNLTHRLERLSTHEdRKKAVECLEWEAFAWKEDPINGPLGVLRRKEREIEFLKNQLM 110
               7************************************************98888**************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MSVESGEDIP NSRHACAACK HQRKKCLSNC IFIPFYPATG ADSFKEVQRI FGVKNLTHRL  60
ERLSTHEDRK KAVECLEWEA FAWKEDPING PLGVLRRKER EIEFLKNQLM NYTANPIALQ  120
KVMPMVAYQN MTPYNHHNNS AGNVAIACNN NSVFTNFGYS FDNQNNLGFM DRSIYNNYGG  180
FVMGGGEIGN QVTDYTVPFS AVVAQGQATM PDVNVAYHAT PVAPKQETQM NHQSLDGAVM  240
NRPAVAASFN QGRQYQQRGN QQQKQQARLN IREPFEHRHA D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.15e-22LBD family protein