PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76178
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 404aa    MW: 45998.2 Da    PI: 5.2319
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76178genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.1e-35141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++ ++++sws++++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++i+
      OMO76178  14 FLTKTYEMVDDPSSDSVVSWSASNKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFIRGQPHLLKNIH 101
                   9********************999****************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
      OMO76178 102 RRKP 105
                   *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MDDAQASSSS LPPFLTKTYE MVDDPSSDSV VSWSASNKSF IVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFI RGQPHLLKNI HRRKPVHSHS MPNLLGQGAS  120
PLTETERQNI KDDIERLKQE KESLLLELKR HEQERQGFEM QMRLLRERLQ NMERRQRTMV  180
SSVARVLQQP GLAINLTPHL EANERKRRLP RIAYLYGEAV IDDNQTGSSQ SARENADGTS  240
LSNMESFDQL ESSMVFWENL VLDFGETNIR LNSNLELDES TSCAESPAIS CIQLNDVRPK  300
SPGIDMNSEP TTVVASEQVA AKDQAVGTTV PAPAAAGVND VFWEQFLTEN PGATDTHEVQ  360
SERKDSDARK SESKHGDHGR FWWNMKNVNN LSEQMGHLTP AERT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-131HSF family protein