PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO75177

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 588aa MW: 61890.3 Da PI: 7.4813

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO75177	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.4	2e-41	192	307	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.............. 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ OMO75177 192 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphsfhsala 292 5699****************************************************************999888888888885544444444455555554 PP TCP 89 ..............k 89 + OMO75177 293 lashhhhhpyeegfA 307 444444444444442 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MELTDLQSNK QSSNNTNTNN NNNNNNNNNS STTTEPHHHH HHQSLHHHHH LLLGQHQKQS 60 PSPSLVVPFD GSRSSSATPN PFNMASFSPS HPHHHPLHPH HHHHLLLNPS SSTAATSPTP 120 PLSSSSSSSS SSSSSASTTT TNPPQLVDAS LAIATRSTSL NTDSAKKNQP NLQVSTTTTT 180 TTTTAVTTAN PPVKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL 240 LQQAEPAIIA ATGTGTIPAN FSTLNVSLRS SGSTLSAPPS KSAPHSFHSA LALASHHHHH 300 PYEEGFAHSA LLGFHHQQQQ HQQSQHHLLT ADQIAEALPG GGSGGGGGGG DSGNSSENYM 360 RKRFREDLFK DESNQQQGES GSGGGGGGSG SGDGSPIKAF KSSLSQLPKP EQEAGSSGLL 420 RSSNILPATA MWAVAPAPTS GAGSTFWMLP VTTGAAGPSV ATGASGAGPS EPQMWPFGTA 480 SPASGNTLQA PLHFLPRFNL PGNLEFQGGR ASPLQLGSML MQQQPSQHLG LGMSESNLGM 540 LAALNAYSRS GSNINSEQNN PMEHHHHQQQ QHQPQGTDSG DEDPNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MELTDLQSNK QSSNNTNTNN NNNNNNNNNS STTTEPHHHH HHQSLHHHHH LLLGQHQKQS  60
PSPSLVVPFD GSRSSSATPN PFNMASFSPS HPHHHPLHPH HHHHLLLNPS SSTAATSPTP  120
PLSSSSSSSS SSSSSASTTT TNPPQLVDAS LAIATRSTSL NTDSAKKNQP NLQVSTTTTT  180
TTTTAVTTAN PPVKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL  240
LQQAEPAIIA ATGTGTIPAN FSTLNVSLRS SGSTLSAPPS KSAPHSFHSA LALASHHHHH  300
PYEEGFAHSA LLGFHHQQQQ HQQSQHHLLT ADQIAEALPG GGSGGGGGGG DSGNSSENYM  360
RKRFREDLFK DESNQQQGES GSGGGGGGSG SGDGSPIKAF KSSLSQLPKP EQEAGSSGLL  420
RSSNILPATA MWAVAPAPTS GAGSTFWMLP VTTGAAGPSV ATGASGAGPS EPQMWPFGTA  480
SPASGNTLQA PLHFLPRFNL PGNLEFQGGR ASPLQLGSML MQQQPSQHLG LGMSESNLGM  540
LAALNAYSRS GSNINSEQNN PMEHHHHQQQ QHQPQGTDSG DEDPNNSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-80	TCP family protein

Link Out ? help Back to Top
Ensembl	OMO75177