PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74442
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 349aa    MW: 38548.8 Da    PI: 7.5925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74442genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.6e-0865112354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +  rE+ RRdr+N+ f eL   l ++     ++++Ka+iL+ ++  +k+L
  OMO74442  65 LQKADREKLRRDRLNEHFLELGNALDPD----RPRNDKATILTDTILLLKDL 112
               56778********************997....799***********999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MDQLKNDAAA AAYVQSIPSS KSSIIEFRQP PIDRRAPSTT TTRTQPKPSQ RVDGEGKDCL  60
AARKLQKADR EKLRRDRLNE HFLELGNALD PDRPRNDKAT ILTDTILLLK DLTSQVTKLK  120
AEYSTLTEES RELTQEKNDL KEEKASLRSD IDNLNAQYQQ RVRTMFPWTT VDHSVVMAPT  180
SYPFPVPMAM APPAAIPIHP SMQPYPFFGN QNPGVIHNPC TTFVPYMTPN PMVEQQSTQH  240
VAPVAQPGSH SNASGKQDSN NKISGESKID KTVDSNDVAT DLELKTPGST ADQDLSSGQR  300
KLKKSLRNEN SNTEQSYSSR CSSSYSAQDS SSNSIVGGRK ADDRDGGKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.19e-80bHLH family protein