PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74078
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 297aa    MW: 32137.9 Da    PI: 8.4865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74078genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20142191255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  OMO74078 142 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDKAAIDFRG 191
               59*******.**********82....48**********************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MQWSMKRQRL CPAPPSMTPP PPSELPHRLS REQEINVMVS ALKNVINGST PAATSASFAF  60
DFPFHLGASG AAASSSSTVT AGFNTNFGNM VLQPSEVMDK CHVCKHVDCL GCNLFPPSQQ  120
EEKKASTSRN TTTGKTKRVK KNYRGVRQRP WGKWAAEIRD PRRATRVWLG TFNTAEEAAR  180
AYDKAAIDFR GPRAKLNFPF PDNVSNNATL TTTTTTTTTP AAATIPAPAP VTATKSNAVM  240
SDQETSSSLN LQQQSTEMGF GTDFLDGMSD DDIQKWIEEL GGDSSDSATT MGNAYSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.16e-31ERF family protein