PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72620
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family AP2
Protein Properties Length: 437aa    MW: 47764.4 Da    PI: 6.8491
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72620genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.91.6e-10196246155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s++ GV+ +k  grW+A+   +     +k+++lg f+++ +Aa+a+++a+ k +g
  OMO72620 196 SHIWGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVDAARAYDKAAIKCNG 246
               6788******.7******5553..2.26**********99**********99776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    
MLDLNLSVVL SGGCGGDDDS AVEMAGAKLR QFSGCCNNNN NNNNQMESSG SFDSSVVNAD  60
TTTTTGDDDS SSNAAATDTI AYSFGILKTT QEEQGDNNNN SNRTISLFPV NVEGGGGKST  120
GSSQKQWLDL GGSREASELR SGAAEQRITA HQQQQQQQLQ QVQLRHQVKK SRRGPRSRSS  180
QYRGVTFYRR TGRWESHIWG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VDAARAYDKA  240
AIKCNGREAV TNFEPSTYEG ELISDPENGD RNQGLDLNLG IAPPDSQKEN DNTNNYAIQH  300
GWDGMPLERG ARIENSAPGA MRVQPSLGQA MAFKHLPNWN GANPSFFPVY RERAIEKRIE  360
VDSAPSWAWQ MQSPYGGANP VPLFPTAASS GFSSSSITSP SAAAGQLRNI PNTTFLHHHH  420
FPPAITNPNI SNFYCRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-40AP2 family protein