PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO71395 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 240aa MW: 27580 Da PI: 8.308 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.6 | 5.6e-35 | 28 | 119 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y +++d++++++isw+++g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++ weF ++ F+kg++ell++i+ OMO71395 28 FLLKTYMMVDDPATDDVISWNADGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFQKGERELLCNIR 115 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k OMO71395 116 RRKA 119 *985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence |
MLMDQSMASD SNNKGLLEYV RKSTPPPFLL KTYMMVDDPA TDDVISWNAD GTGFVVWQPA 60 EFARDLLPTL FKHSNFSSFV RQLNTYGFRK VATSRWEFCN DMFQKGEREL LCNIRRRKAW 120 ANKQQNAAPT QASPQESEED QRSSSTSSSS GYNSLVDENK RLKKENGVLS SELTSMKRKC 180 KELLELVAKY AQFEKEKEDD HDHSPKLFGV RLEVEGERER KRRRAEISES ASILLSQSCK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 220 | 224 | RKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41690.1 | 7e-67 | HSF family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO71395 |