PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G41690.1 | ||||||||
Common Name | AT-HSFB3, HSF05, HSFB3, T32G6.21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 244aa MW: 28307.5 Da PI: 5.1036 | ||||||||
Description | heat shock transcription factor B3 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.9 | 3.9e-34 | 41 | 133 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y+++ed++++ +isw+e g+ fvv+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++ + weF+++ F+kg++el+++i+ AT2G41690.1 41 FLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFSNEMFRKGQRELMSNIR 128 9*****************************************************************99.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ AT2G41690.1 129 RRKSQ 133 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 9.6E-57 | 37 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.72E-32 | 37 | 130 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.1E-35 | 38 | 130 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.0E-29 | 41 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.4E-18 | 41 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.4E-18 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 80 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.4E-18 | 92 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000005 | anatomy | cultured plant cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEDAGEHLRC NDNVNDEERL PLEFMIGNST STAELQPPPP FLVKTYKVVE DPTTDGVISW 60 NEYGTGFVVW QPAEFARDLL PTLFKHCNFS SFVRQLNTYG FRKVTTIRWE FSNEMFRKGQ 120 RELMSNIRRR KSQHWSHNKS NHQVVPTTTM VNQEGHQRIG IDHHHEDQQS SATSSSFVYT 180 ALLDENKCLK NENELLSCEL GKTKKKCKQL MELVERYRGE DEDATDESDD EEDEGLKLFG 240 VKLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-22 | 39 | 130 | 18 | 120 | Heat shock factor protein 1 |
5hdg_A | 2e-22 | 39 | 130 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 2e-22 | 39 | 130 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 2e-22 | 39 | 130 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 2e-22 | 39 | 130 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 2e-22 | 39 | 130 | 8 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18405778 | 0.0 | ||||
Genevisible | 245107_at | 0.0 | ||||
Expression Atlas | AT2G41690 | - | ||||
AtGenExpress | AT2G41690 | - | ||||
ATTED-II | AT2G41690 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of Heat Stress Transcription Factor (Hsf) family | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G41690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G41690 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT029452 | 0.0 | BT029452.1 Arabidopsis thaliana At2g41690 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181700.1 | 0.0 | heat shock transcription factor B3 | ||||
Swissprot | O22230 | 0.0 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A178VUP7 | 0.0 | A0A178VUP7_ARATH; HSFB3 | ||||
STRING | AT2G41690.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10814 | 27 | 31 | Representative plant | OGRP96 | 17 | 233 |
Link Out ? help Back to Top | |
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Phytozome | AT2G41690.1 |
Entrez Gene | 818767 |
iHOP | AT2G41690 |
wikigenes | AT2G41690 |