PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO71288

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 295aa MW: 32488.8 Da PI: 8.4977

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO71288	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00043	230	252	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ L+ H ++ H OMO71288 230 QCPQCGVKFSSVTKLVEHVQKvH 252 7******************9988 PP
2	zf-C2H2	17	1.6e-05	267	289	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ L++H + H OMO71288 267 VCPRCNKGFRDPVALVQHVERdH 289 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MGTPAFPNLG KHCSVEDCKQ IDFLPFTCDR CQLVYCLEHR SYIKHHCPKA DKNDVTVVIC 60 PLCAKGVRLN PDEDPNITWE THVNTECDPS NYEKVTKKKK CPVPGCREVL TFSNTIKCRD 120 CTIDHCLKHR FGPDHKCPGP KKPDSAFPFT GLLSMSRKEP PKNNRAPATS SSSWATSFLN 180 AASSGMTKLS SEISEKWQIA RDGVGLSSTN SSTNSSTSSS SSGSAGQVEQ CPQCGVKFSS 240 VTKLVEHVQK VHERNNQSRV FKMSIDVCPR CNKGFRDPVA LVQHVERDHG GSSKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-126	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO71288