PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO71146

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 679aa MW: 77669.5 Da PI: 7.8394

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO71146	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.4	7.3e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+A+++GFs+r+++++ + + t+r fvC + g++ +++++ k +r+r+++r+gC+a l+++k + ++w+vt ++++HnHel OMO71146 62 EFYSEFARRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSNDGKPQRNRKSSRCGCQAYLRISKVTdlgPAEWRVTGFVNHHNHELL 155 6************9998877356667999***********999******************9977779************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MSEDAGQMLV VYDDPSDQRS LSLDETSSTE ESPDETRLSL ETTNDAIPYI GQRFATHDAA 60 YEFYSEFARR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSND GKPQRNRKSS 120 RCGCQAYLRI SKVTDLGPAE WRVTGFVNHH NHELLEPNQV RFLPAYRTIS DADKNRILMF 180 AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQAFR KLDQEDESID LLRMCRNIKE 240 KDPNFKFEYS LDSNGRLDNI AWSYASSVQS YDIFGDAVVF DTTHRLTAFD MPLGIWVGVN 300 NYGMPCFFGC ALLRDENLRS LSWALKAFLG FMDGKAPQTI LTDQNMCLKE AIAIEMPSTK 360 HTLCIWMIVA KFPSWFNAVL GERYNEWKAE FYRLYNLESI EDFELGWRDM VNSFGLHTNR 420 HISNLFALRS MWALPYLRSH FFAGMTTTGH SKAINAFIQR FLSAQTRLAH FVEQVAVAVD 480 FKDQAAEQQT MQQNLQNICL KTGAPMESHA ASILTPFAFS KLQEQLVLAA HYASFQMDDG 540 FLVRHHTKLD GGRKVYWVPQ EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPDRYLPL 600 RWRRISTSPT KVLHNSPSDH TERIQLLQSM VSTLVSESAK SKERLAIATE QVTILLSRIR 660 EQPVASQGLR DISPIHRNI

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MSEDAGQMLV VYDDPSDQRS LSLDETSSTE ESPDETRLSL ETTNDAIPYI GQRFATHDAA  60
YEFYSEFARR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSND GKPQRNRKSS  120
RCGCQAYLRI SKVTDLGPAE WRVTGFVNHH NHELLEPNQV RFLPAYRTIS DADKNRILMF  180
AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQAFR KLDQEDESID LLRMCRNIKE  240
KDPNFKFEYS LDSNGRLDNI AWSYASSVQS YDIFGDAVVF DTTHRLTAFD MPLGIWVGVN  300
NYGMPCFFGC ALLRDENLRS LSWALKAFLG FMDGKAPQTI LTDQNMCLKE AIAIEMPSTK  360
HTLCIWMIVA KFPSWFNAVL GERYNEWKAE FYRLYNLESI EDFELGWRDM VNSFGLHTNR  420
HISNLFALRS MWALPYLRSH FFAGMTTTGH SKAINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQAAEQQT MQQNLQNICL KTGAPMESHA ASILTPFAFS KLQEQLVLAA HYASFQMDDG  540
FLVRHHTKLD GGRKVYWVPQ EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPDRYLPL  600
RWRRISTSPT KVLHNSPSDH TERIQLLQSM VSTLVSESAK SKERLAIATE QVTILLSRIR  660
EQPVASQGLR DISPIHRNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO71146