PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70762
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 264aa    MW: 30132.7 Da    PI: 5.1672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70762genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26053.95.1e-1733118290
    DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
               Ca+Ck+ rr+C++dC++a+ +p +   +f  +++ +G + + k+l  ++    e+++++ v+eA+ r + Pv G++g + ++ qq  q+
  OMO70762  33 CAVCKHNRRRCEEDCFFAKTYPTALDGQFSLINERYGHKSIKKMLVGTE---PEMTLQTSVMEAQDREHYPVLGSYGWFDHVLQQNPQA 118
               *********************************************9955...56889999*******************9999887766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MEQEQDPGRK QEPGGKKQQD PGRKKQEPRR RTCAVCKHNR RRCEEDCFFA KTYPTALDGQ  60
FSLINERYGH KSIKKMLVGT EPEMTLQTSV MEAQDREHYP VLGSYGWFDH VLQQNPQADS  120
SFIRHLLWSK LQTPTIPTAA ETPTTMKEIV PGPSEEELLA APGELMRRAT EKTKVQNKET  180
KASSSPSALT LLQEVYDHDE TGEDEDNPEE TKALSLQEPT GLDSLTFALP NLLQEPEPVR  240
LGDESEETIK KPKRKWTERW SDQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50510.12e-10LBD family protein