PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO70564

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 390aa MW: 43089.3 Da PI: 9.8667

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70564	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.2	1.2e-14	83	170	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ + ++pk qCk++++ ++k+yk +k+ + ++ + s++++f++l+ OMO70564 83 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYMKTPKtdiQCKNRIDTVKKKYKLEKTKMASG--GGPSKWVFFEKLD 170 7***********************************856666666543339****************97..67778****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MEEDEEIQSH RSPGATGSQS PSSPSPTSNG RITVTVAAVP PCEPPLSEEP QQHENKLALA 60 LVPPQPQPLQ TKNNGGGGGR EDCWSEGATG VLIDAWGERY LELSRGNLKQ KHWKEVADIV 120 SSREDYMKTP KTDIQCKNRI DTVKKKYKLE KTKMASGGGP SKWVFFEKLD RLIGPTAKVS 180 VNAAAVGGGG SPGFMSKVPM GIPVGIRSSL NPLRASQLHE RQQQQQQQKQ PRMVALKNQN 240 KMQLRKRGPV ETDSEDEDEE EEADSLDSFP PPPTGKRAKR TVHKGVNSGG KGKKWGNSVR 300 ELTQAILRFG EAYEQAESAK LQQVVEMEKQ RMKFAKELEL QRMQFFMKTQ LEISQLKHGK 360 RAGGHGNSSN HHSNINISNN NNNNNNSDSN

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MEEDEEIQSH RSPGATGSQS PSSPSPTSNG RITVTVAAVP PCEPPLSEEP QQHENKLALA  60
LVPPQPQPLQ TKNNGGGGGR EDCWSEGATG VLIDAWGERY LELSRGNLKQ KHWKEVADIV  120
SSREDYMKTP KTDIQCKNRI DTVKKKYKLE KTKMASGGGP SKWVFFEKLD RLIGPTAKVS  180
VNAAAVGGGG SPGFMSKVPM GIPVGIRSSL NPLRASQLHE RQQQQQQQKQ PRMVALKNQN  240
KMQLRKRGPV ETDSEDEDEE EEADSLDSFP PPPTGKRAKR TVHKGVNSGG KGKKWGNSVR  300
ELTQAILRFG EAYEQAESAK LQQVVEMEKQ RMKFAKELEL QRMQFFMKTQ LEISQLKHGK  360
RAGGHGNSSN HHSNINISNN NNNNNNSDSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	2e-59	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO70564