PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70456
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Trihelix
Protein Properties Length: 349aa    MW: 38986.9 Da    PI: 9.4066
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70456genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.66.9e-1824116286
  trihelix   2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               Wt +e+l+Liea++ ++er  +++          + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ +++s ++ p + ++e
  OMO70456  24 WTVNETLVLIEAKKMDDERRMKKSgdgserskPTELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYQRRLAENSNNEGPSYWEIE 116
               *************97766666432223333338899*****************************************9999888889888886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MRLVMADQGG NNNIVMREYR KGNWTVNETL VLIEAKKMDD ERRMKKSGDG SERSKPTELR  60
WKWVEDYCWK KGCLRSQNQC NDKWDNLMRD YKKVREYQRR LAENSNNEGP SYWEIEKNER  120
KEKNLPSNML RQIYERLEEV VEKKGVQNRV VLVASPGGSA PNPANIPYAV TSMQQPSLPP  180
LLQQQLSSAP QPLTALPLPV PPAAPPLPPP SASPPPVLQP PPLPYAQPLP TVDSDTSEYS  240
DSPAKRRRRS TGGNGEGTSA TASANNSNEV GTAISKSASI IAEAIQASDE REERRHRDLV  300
NLHERRLKIE ESKTEINKNG IEGLVDAINN LANSILALAS HKNQSSAPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-61Trihelix family protein